{
  "_id": "6a1d36601d7bb097a0a3d123",
  "Type": "Package",
  "Package": "rnmamod",
  "Title": "Bayesian Network Meta-Analysis with Missing Participants",
  "Version": "0.5.0",
  "Date": "2025-06-13",
  "Authors@R": "c(\nperson(\"Loukia\", \"Spineli\", email = \"Spineli.Loukia@mh-hannover.de\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Chrysostomos\", \"Kalyvas\", role = \"ctb\"),\nperson(\"Katerina\", \"Papadimitropoulou\", role = \"ctb\")\n)",
  "Maintainer": "Loukia Spineli <Spineli.Loukia@mh-hannover.de>",
  "Description": "A comprehensive suite of functions to perform and\nvisualise pairwise and network meta-analysis with aggregate\nbinary or continuous missing participant outcome data. The\npackage covers core Bayesian one-stage models implemented in a\nsystematic review with multiple interventions, including\nfixed-effect and random-effects network meta-analysis,\nmeta-regression, evaluation of the consistency assumption via\nthe node-splitting approach and the unrelated mean effects\nmodel (original and revised model proposed by Spineli, (2021)\n<doi:10.1177/0272989X211068005>), and sensitivity analysis (see\nSpineli et al., (2021) <doi:10.1002/jrsm.1478> and Spineli et\nal., (2021) <doi:10.1186/s12916-021-02195-y>). Missing\nparticipant outcome data are addressed in all models of the\npackage (see Spineli, (2019) <doi:10.1186/s12874-019-0731-y>,\nSpineli et al., (2019) <doi:10.1002/sim.8207>, Spineli, (2019)\n<doi:10.1016/j.jclinepi.2018.09.002>, and Spineli et al.,\n(2021) <doi:10.1177/0962280220983544>). The robustness to\nprimary analysis results can also be investigated using a novel\nintuitive index (see Spineli et al., (2021)\n<doi:10.1002/jrsm.1478> and Spineli et al., (2021)\n<doi:10.1186/s12916-021-02195-y>). Methods to evaluate the\ntransitivity assumption using trial dissimilarities and\nhierarchical clustering are provided (see Spineli, (2024)\n<doi:10.1186/s12874-024-02436-7>, and Spineli et al., (2025)\n<doi:10.1002/sim.70068>). A novel index to facilitate\ninterpretation of local inconsistency is also available (see\nSpineli, (2024) <doi:10.1186/s13643-024-02680-4>) The package\nalso offers a rich, user-friendly visualisation toolkit that\naids in appraising and interpreting the results thoroughly and\npreparing the manuscript for journal submission. The\nvisualisation tools comprise the network plot, forest plots,\npanel of diagnostic plots, heatmaps on the extent of missing\nparticipant outcome data in the network, league heatmaps on\nestimation and prediction, rankograms, Bland-Altman plot,\nleverage plot, deviance scatterplot, heatmap of robustness,\nbarplot of Kullback-Leibler divergence, heatmap of comparison\ndissimilarities and dendrogram of comparison clustering. The\npackage also allows the user to export the results to an Excel\nfile at the working directory.",
  "License": "GPL (>= 3)",
  "URL": "https://CRAN.R-project.org/package=rnmamod,\nhttps://github.com/LoukiaSpin/rnmamod,\nhttps://loukiaspin.github.io/rnmamod/",
  "BugReports": "https://github.com/LoukiaSpin/rnmamod/issues",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "LazyData": "true",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "cmake libglpk-dev make libmagick++-dev gsfonts jags\nlibicu-dev libjpeg-dev libpng-dev libuv1-dev libxml2-dev\nlibssl-dev libx11-dev zlib1g-dev",
  "Repository": "https://loukiaspin.r-universe.dev",
  "Date/Publication": "2026-01-30 15:41:01 UTC",
  "RemoteUrl": "https://github.com/loukiaspin/rnmamod",
  "RemoteRef": "HEAD",
  "RemoteSha": "9c70b332c812f635080ca2444bb77cfa939fde07",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-01 07:20:01 UTC",
    "User": "root"
  },
  "Author": "Loukia Spineli [aut, cre],\nChrysostomos Kalyvas [ctb],\nKaterina Papadimitropoulou [ctb]",
  "MD5sum": "751c705f99e2f25e198dcf4ff280f303",
  "_user": "loukiaspin",
  "_type": "src",
  "_file": "rnmamod_0.5.0.tar.gz",
  "_fileid": "9ac258f18f3fa91c466297c384d7f3b6d3f20fb9bfe30030319575ecb1902d72",
  "_filesize": 1888671,
  "_sha256": "9ac258f18f3fa91c466297c384d7f3b6d3f20fb9bfe30030319575ecb1902d72",
  "_created": "2026-06-01T07:20:01.000Z",
  "_published": "2026-06-01T07:36:00.903Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78804555427,
      "time": 269,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7325611727"
    },
    {
      "job": 78804555470,
      "time": 254,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7325607808"
    },
    {
      "job": 78804555437,
      "time": 174,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7325754300"
    },
    {
      "job": 78804555560,
      "time": 157,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7325784665"
    },
    {
      "job": 78803894064,
      "time": 305,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7325539251"
    },
    {
      "job": 78804555439,
      "time": 169,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7325584565"
    },
    {
      "job": 78804555412,
      "time": 211,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7325596240"
    },
    {
      "job": 78804555462,
      "time": 240,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7325604159"
    },
    {
      "job": 78804555485,
      "time": 214,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7325596776"
    }
  ],
  "_buildurl": "https://github.com/r-universe/loukiaspin/actions/runs/26740721596",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/loukiaspin/rnmamod",
  "_commit": {
    "id": "9c70b332c812f635080ca2444bb77cfa939fde07",
    "author": "LoukiaSpin <spineli.loukia@mh-hannover.de>",
    "committer": "LoukiaSpin <spineli.loukia@mh-hannover.de>",
    "message": "Update gower_distance function\n",
    "time": 1769787661
  },
  "_maintainer": {
    "name": "Loukia Spineli",
    "email": "spineli.loukia@mh-hannover.de",
    "login": "loukiaspin",
    "description": "Biostatistician, Evidence synthesis enthusiast",
    "uuid": 61583385
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "cluster",
      "role": "Imports"
    },
    {
      "package": "coda",
      "version": ">= 0.13",
      "role": "Imports"
    },
    {
      "package": "dendextend",
      "role": "Imports"
    },
    {
      "package": "gemtc",
      "role": "Imports"
    },
    {
      "package": "ggfittext",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggpubr",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "heatmaply",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "R2jags",
      "role": "Imports"
    },
    {
      "package": "reshape2",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "writexl",
      "role": "Imports"
    },
    {
      "package": "metafor",
      "role": "Suggests"
    },
    {
      "package": "netmeta",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "loukiaspin",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-24",
      "n": 4
    },
    {
      "week": "2025-27",
      "n": 4
    },
    {
      "week": "2025-31",
      "n": 1
    },
    {
      "week": "2026-05",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v0.5.0",
      "date": "2025-06-13"
    }
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "loukiaspin",
      "count": 1208,
      "uuid": 61583385
    },
    {
      "user": "katerina-pap",
      "count": 30,
      "uuid": 10911702
    },
    {
      "user": "gordongrabert",
      "count": 18,
      "uuid": 68352838
    },
    {
      "user": "olivroy",
      "count": 7,
      "uuid": 52606734
    },
    {
      "user": "ckalyvas",
      "count": 1,
      "uuid": 66085334
    }
  ],
  "_userbio": {
    "uuid": 61583385,
    "type": "user",
    "name": "Loukia Spineli",
    "description": "Biostatistician, Evidence synthesis enthusiast"
  },
  "_downloads": {
    "count": 246,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rnmamod"
  },
  "_devurl": "https://github.com/loukiaspin/rnmamod",
  "_pkgdown": "https://loukiaspin.github.io/rnmamod/",
  "_searchresults": 12,
  "_topics": [
    "jags",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/rnmamod.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/loukiaspin/rnmamod",
  "_realowner": "loukiaspin",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2021-11-29"
    },
    {
      "version": "0.2.0",
      "date": "2022-04-06"
    },
    {
      "version": "0.3.0",
      "date": "2022-11-01"
    },
    {
      "version": "0.4.0",
      "date": "2024-03-24"
    },
    {
      "version": "0.5.0",
      "date": "2025-06-13"
    }
  ],
  "_exports": [
    "balloon_plot",
    "baseline_model",
    "bland_altman_plot",
    "comp_clustering",
    "covar_contribution_plot",
    "data_preparation",
    "dendro_heatmap",
    "describe_network",
    "distr_characteristics",
    "forestplot",
    "forestplot_juxtapose",
    "forestplot_metareg",
    "gower_distance",
    "heatmap_missing_dataset",
    "heatmap_missing_network",
    "heatmap_robustness",
    "heter_density_plot",
    "heterogeneity_param_prior",
    "improved_ume",
    "inconsistency_variance_prior",
    "internal_measures_plot",
    "intervalplot_panel_ume",
    "kld_barplot",
    "kld_inconsistency",
    "kld_inconsistency_user",
    "kld_measure",
    "league_heatmap",
    "league_heatmap_pred",
    "league_table_absolute",
    "league_table_absolute_user",
    "leverage_plot",
    "mcmc_diagnostics",
    "metareg_plot",
    "miss_characteristics",
    "missingness_param_prior",
    "netplot",
    "nodesplit_plot",
    "plot_study_dissimilarities",
    "prepare_model",
    "prepare_nodesplit",
    "prepare_ume",
    "rankosucra_plot",
    "robustness_index",
    "robustness_index_user",
    "run_metareg",
    "run_model",
    "run_nodesplit",
    "run_sensitivity",
    "run_series_meta",
    "run_ume",
    "scatterplot_sucra",
    "scatterplots_dev",
    "series_meta_plot",
    "study_perc_contrib",
    "table_tau2_prior",
    "taylor_continuous",
    "taylor_imor",
    "ume_plot",
    "unrelated_effects_plot"
  ],
  "_datasets": [
    {
      "name": "nma.baker2009",
      "title": "Pharmacological interventions for chronic obstructive pulmonary disease",
      "object": "nma.baker2009",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "t1",
        "t2",
        "t3",
        "t4",
        "r1",
        "r2",
        "r3",
        "r4",
        "m1",
        "m2",
        "m3",
        "m4",
        "n1",
        "n2",
        "n3",
        "n4"
      ],
      "rows": 21,
      "table": true,
      "tojson": true
    },
    {
      "name": "nma.bottomley2011",
      "title": "Pharmacological interventions for moderately severe scalp psoriasis",
      "object": "nma.bottomley2011",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "t1",
        "t2",
        "t3",
        "t4",
        "r1",
        "r2",
        "r3",
        "r4",
        "m1",
        "m2",
        "m3",
        "m4",
        "n1",
        "n2",
        "n3",
        "n4"
      ],
      "rows": 9,
      "table": true,
      "tojson": true
    },
    {
      "name": "nma.dogliotti2014",
      "title": "Oral antithrombotics for stroke episode",
      "object": "nma.dogliotti2014",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "t1",
        "t2",
        "t3",
        "r1",
        "r2",
        "r3",
        "m1",
        "m2",
        "m3",
        "n1",
        "n2",
        "n3"
      ],
      "rows": 16,
      "table": true,
      "tojson": true
    },
    {
      "name": "nma.fluoride.donegan2018",
      "title": "Topical fluoride interventions for preventing dental caries",
      "object": "nma.fluoride.donegan2018",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "t1",
        "t2",
        "SMD",
        "SE",
        "year",
        "Cov",
        "SD1",
        "N1",
        "SD2",
        "N2",
        "SD3",
        "N3",
        "SD4",
        "N4",
        "S_pooled"
      ],
      "rows": 140,
      "table": true,
      "tojson": true
    },
    {
      "name": "nma.liu2013",
      "title": "Antidepressants in Parkinson's disease",
      "object": "nma.liu2013",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "t1",
        "t2",
        "t3",
        "r1",
        "r2",
        "r3",
        "m1",
        "m2",
        "m3",
        "n1",
        "n2",
        "n3"
      ],
      "rows": 11,
      "table": true,
      "tojson": true
    },
    {
      "name": "nma.malaria.donegan2018",
      "title": "Artemether, artesunate and quinine for severe malaria",
      "object": "nma.malaria.donegan2018",
      "class": [
        "data.frame"
      ],
      "fields": [
        "s",
        "t1",
        "t2",
        "lor",
        "se",
        "x",
        "xcent",
        "r1",
        "n1",
        "r2",
        "n2"
      ],
      "rows": 24,
      "table": true,
      "tojson": true
    },
    {
      "name": "nma.schwingshackl2014",
      "title": "Training modalities for patients with type 2 diabetes",
      "object": "nma.schwingshackl2014",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "t1",
        "t2",
        "t3",
        "y1",
        "y2",
        "y3",
        "sd1",
        "sd2",
        "sd3",
        "m1",
        "m2",
        "m3",
        "n1",
        "n2",
        "n3"
      ],
      "rows": 14,
      "table": true,
      "tojson": true
    },
    {
      "name": "nma.stowe2011",
      "title": "Antiparkinsonian interventions for later Parkinson's disease",
      "object": "nma.stowe2011",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "t1",
        "t2",
        "y1",
        "y2",
        "sd1",
        "sd2",
        "m1",
        "m2",
        "n1",
        "n2"
      ],
      "rows": 29,
      "table": true,
      "tojson": true
    },
    {
      "name": "pma.hetrick2012",
      "title": "Paroxetine versus placebo for depressive disorders",
      "object": "pma.hetrick2012",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "t1",
        "t2",
        "r1",
        "r2",
        "m1",
        "m2",
        "n1",
        "n2"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    },
    {
      "name": "pma.taylor2004",
      "title": "Inositol versus glucose for depressive episode",
      "object": "pma.taylor2004",
      "class": [
        "data.frame"
      ],
      "fields": [
        "study",
        "t1",
        "t2",
        "y1",
        "y2",
        "sd1",
        "sd2",
        "m1",
        "m2",
        "n1",
        "n2"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "rnmamod-package",
      "title": "rnmamod: Bayesian Network Meta-analysis with Missing Participants",
      "topics": [
        "rnmamod-package",
        "rnmamod"
      ]
    },
    {
      "page": "balloon_plot",
      "title": "Enhanced balloon plot",
      "topics": [
        "balloon_plot"
      ]
    },
    {
      "page": "baseline_model",
      "title": "The baseline model for binary outcome",
      "topics": [
        "baseline_model"
      ]
    },
    {
      "page": "bland_altman_plot",
      "title": "The Bland-Altman plot",
      "topics": [
        "bland_altman_plot"
      ]
    },
    {
      "page": "comp_clustering",
      "title": "End-user-ready results for comparison dissimilarity and hierarchical clustering (Comparisons' comparability for transitivity evaluation)",
      "topics": [
        "comp_clustering"
      ]
    },
    {
      "page": "covar_contribution_plot",
      "title": "Visualising study percentage contributions against a covariate",
      "topics": [
        "covar_contribution_plot"
      ]
    },
    {
      "page": "data_preparation",
      "title": "Prepare the dataset in the proper format for R2jags",
      "topics": [
        "data_preparation"
      ]
    },
    {
      "page": "dendro_heatmap",
      "title": "Dendrogram with amalgamated heatmap (Comparisons' comparability for transitivity evaluation)",
      "topics": [
        "dendro_heatmap"
      ]
    },
    {
      "page": "describe_network",
      "title": "A function to describe the evidence base",
      "topics": [
        "describe_network"
      ]
    },
    {
      "page": "distr_characteristics",
      "title": "Visualising the distribution of characteristics (Comparisons' comparability for transitivity evaluation)",
      "topics": [
        "distr_characteristics"
      ]
    },
    {
      "page": "forestplot",
      "title": "Comparator-specific forest plot for network meta-analysis",
      "topics": [
        "forestplot"
      ]
    },
    {
      "page": "forestplot_juxtapose",
      "title": "Forest plot of juxtaposing several network meta-analysis models",
      "topics": [
        "forestplot_juxtapose"
      ]
    },
    {
      "page": "forestplot_metareg",
      "title": "Comparator-specific forest plot for network meta-regression",
      "topics": [
        "forestplot_metareg"
      ]
    },
    {
      "page": "gower_distance",
      "title": "Weighted Gower's dissimilarity measure (Trials' comparability for transitivity evaluation)",
      "topics": [
        "gower_distance"
      ]
    },
    {
      "page": "heatmap_missing_dataset",
      "title": "Heatmap of proportion of missing participants in the dataset",
      "topics": [
        "heatmap_missing_dataset"
      ]
    },
    {
      "page": "heatmap_missing_network",
      "title": "Heatmap of proportion of missing participants in the network",
      "topics": [
        "heatmap_missing_network"
      ]
    },
    {
      "page": "heatmap_robustness",
      "title": "Heatmap of robustness",
      "topics": [
        "heatmap_robustness"
      ]
    },
    {
      "page": "heter_density_plot",
      "title": "Visualising the density of two prior distributions for the heterogeneity parameter",
      "topics": [
        "heter_density_plot"
      ]
    },
    {
      "page": "heterogeneity_param_prior",
      "title": "Determine the prior distribution for the heterogeneity parameter",
      "topics": [
        "heterogeneity_param_prior"
      ]
    },
    {
      "page": "improved_ume",
      "title": "Detect the frail comparisons in multi-arm trials",
      "topics": [
        "improved_ume"
      ]
    },
    {
      "page": "inconsistency_variance_prior",
      "title": "Function for the hyper-parameters of the prior distribution of the inconsistency variance (network meta-analysis with random inconsistency effects)",
      "topics": [
        "inconsistency_variance_prior"
      ]
    },
    {
      "page": "internal_measures_plot",
      "title": "Internal measures for cluster validation (Comparisons' comparability for transitivity evaluation)",
      "topics": [
        "internal_measures_plot"
      ]
    },
    {
      "page": "intervalplot_panel_ume",
      "title": "A panel of interval plots for the unrelated mean effects model",
      "topics": [
        "intervalplot_panel_ume"
      ]
    },
    {
      "page": "kld_barplot",
      "title": "Barplot for the Kullback-Leibler divergence measure (missingness scenarios)",
      "topics": [
        "kld_barplot"
      ]
    },
    {
      "page": "kld_inconsistency",
      "title": "Density plots of local inconsistency results and Kullback-Leibler divergence when 'rnmamod', 'netmeta' or 'gemtc' R packages are used",
      "topics": [
        "kld_inconsistency"
      ]
    },
    {
      "page": "kld_inconsistency_user",
      "title": "Density plots of local inconsistency results and Kullback-Leibler divergence (When dataset is created by the user)",
      "topics": [
        "kld_inconsistency_user"
      ]
    },
    {
      "page": "kld_measure",
      "title": "Function for the Kullback-Leibler Divergence of two normally distributed treatment effects for the same pairwise comparison",
      "topics": [
        "kld_measure"
      ]
    },
    {
      "page": "league_heatmap",
      "title": "League heatmap for estimation",
      "topics": [
        "league_heatmap"
      ]
    },
    {
      "page": "league_heatmap_pred",
      "title": "League heatmap for prediction",
      "topics": [
        "league_heatmap_pred"
      ]
    },
    {
      "page": "league_table_absolute",
      "title": "League table for relative and absolute effects",
      "topics": [
        "league_table_absolute"
      ]
    },
    {
      "page": "league_table_absolute_user",
      "title": "League table for relative and absolute effects (user defined)",
      "topics": [
        "league_table_absolute_user"
      ]
    },
    {
      "page": "leverage_plot",
      "title": "Leverage plot",
      "topics": [
        "leverage_plot"
      ]
    },
    {
      "page": "mcmc_diagnostics",
      "title": "Markov Chain Monte Carlo diagnostics",
      "topics": [
        "mcmc_diagnostics"
      ]
    },
    {
      "page": "metareg_plot",
      "title": "End-user-ready results for network meta-regression",
      "topics": [
        "metareg_plot"
      ]
    },
    {
      "page": "miss_characteristics",
      "title": "Visualising missing data in characteristics (Comparisons' comparability for transitivity evaluation)",
      "topics": [
        "miss_characteristics"
      ]
    },
    {
      "page": "missingness_param_prior",
      "title": "Define the mean value of the normal distribution of the missingness parameter",
      "topics": [
        "missingness_param_prior"
      ]
    },
    {
      "page": "netplot",
      "title": "Network plot",
      "topics": [
        "netplot"
      ]
    },
    {
      "page": "nma.baker2009",
      "title": "Pharmacological interventions for chronic obstructive pulmonary disease",
      "topics": [
        "nma.baker2009"
      ]
    },
    {
      "page": "nma.bottomley2011",
      "title": "Pharmacological interventions for moderately severe scalp psoriasis",
      "topics": [
        "nma.bottomley2011"
      ]
    },
    {
      "page": "nma.dogliotti2014",
      "title": "Oral antithrombotics for stroke episode",
      "topics": [
        "nma.dogliotti2014"
      ]
    },
    {
      "page": "nma.fluoride.donegan2018",
      "title": "Topical fluoride interventions for preventing dental caries",
      "topics": [
        "nma.fluoride.donegan2018"
      ]
    },
    {
      "page": "nma.liu2013",
      "title": "Antidepressants in Parkinson's disease",
      "topics": [
        "nma.liu2013"
      ]
    },
    {
      "page": "nma.malaria.donegan2018",
      "title": "Artemether, artesunate and quinine for severe malaria",
      "topics": [
        "nma.malaria.donegan2018"
      ]
    },
    {
      "page": "nma.schwingshackl2014",
      "title": "Training modalities for patients with type 2 diabetes",
      "topics": [
        "nma.schwingshackl2014"
      ]
    },
    {
      "page": "nma.stowe2011",
      "title": "Antiparkinsonian interventions for later Parkinson's disease",
      "topics": [
        "nma.stowe2011"
      ]
    },
    {
      "page": "nodesplit_plot",
      "title": "End-user-ready results for the node-splitting approach",
      "topics": [
        "nodesplit_plot"
      ]
    },
    {
      "page": "plot_study_dissimilarities",
      "title": "Plot Gower's disimilarity values for each study (Transitivity evaluation)",
      "topics": [
        "plot_study_dissimilarities"
      ]
    },
    {
      "page": "pma.hetrick2012",
      "title": "Paroxetine versus placebo for depressive disorders",
      "topics": [
        "pma.hetrick2012"
      ]
    },
    {
      "page": "pma.taylor2004",
      "title": "Inositol versus glucose for depressive episode",
      "topics": [
        "pma.taylor2004"
      ]
    },
    {
      "page": "prepare_model",
      "title": "WinBUGS code for Bayesian pairwise or network meta-analysis and meta-regression",
      "topics": [
        "prepare_model"
      ]
    },
    {
      "page": "prepare_nodesplit",
      "title": "WinBUGS code for the node-splitting approach",
      "topics": [
        "prepare_nodesplit"
      ]
    },
    {
      "page": "prepare_ume",
      "title": "WinBUGS code for the unrelated mean effects model",
      "topics": [
        "prepare_ume"
      ]
    },
    {
      "page": "rankosucra_plot",
      "title": "Rankograms and SUCRA curves",
      "topics": [
        "rankosucra_plot"
      ]
    },
    {
      "page": "robustness_index",
      "title": "Robustness index",
      "topics": [
        "robustness_index"
      ]
    },
    {
      "page": "robustness_index_user",
      "title": "Robustness index when 'metafor' or 'netmeta' are used",
      "topics": [
        "robustness_index_user"
      ]
    },
    {
      "page": "run_metareg",
      "title": "Perform Bayesian pairwise or network meta-regression",
      "topics": [
        "run_metareg"
      ]
    },
    {
      "page": "run_model",
      "title": "Perform Bayesian pairwise or network meta-analysis",
      "topics": [
        "run_model"
      ]
    },
    {
      "page": "run_nodesplit",
      "title": "Perform the node-splitting approach",
      "topics": [
        "run_nodesplit"
      ]
    },
    {
      "page": "run_sensitivity",
      "title": "Perform sensitivity analysis for missing participant outcome data",
      "topics": [
        "run_sensitivity"
      ]
    },
    {
      "page": "run_series_meta",
      "title": "Perform a series of Bayesian pairwise meta-analyses",
      "topics": [
        "run_series_meta"
      ]
    },
    {
      "page": "run_ume",
      "title": "Perform the unrelated mean effects model",
      "topics": [
        "run_ume"
      ]
    },
    {
      "page": "scatterplot_sucra",
      "title": "Scatterplot of SUCRA values",
      "topics": [
        "scatterplot_sucra"
      ]
    },
    {
      "page": "scatterplots_dev",
      "title": "Deviance scatterplots",
      "topics": [
        "scatterplots_dev"
      ]
    },
    {
      "page": "series_meta_plot",
      "title": "End-user-ready results for a series of pairwise meta-analyses",
      "topics": [
        "series_meta_plot"
      ]
    },
    {
      "page": "study_perc_contrib",
      "title": "Calculate study percentage contributions to summary treatment effects or regression coefficients",
      "topics": [
        "study_perc_contrib"
      ]
    },
    {
      "page": "table_tau2_prior",
      "title": "Predictive distributions for the between-study variance in a future meta-analysis on odds ratio or standardised mean difference",
      "topics": [
        "table_tau2_prior"
      ]
    },
    {
      "page": "taylor_continuous",
      "title": "Pattern-mixture model with Taylor series for continuous outcome",
      "topics": [
        "taylor_continuous"
      ]
    },
    {
      "page": "taylor_imor",
      "title": "Pattern-mixture model with Taylor series for a binary outcome",
      "topics": [
        "taylor_imor"
      ]
    },
    {
      "page": "ume_plot",
      "title": "End-user-ready results for the unrelated mean effects model",
      "topics": [
        "ume_plot"
      ]
    },
    {
      "page": "unrelated_effects_plot",
      "title": "End-user-ready results for unrelated trial effects model",
      "topics": [
        "unrelated_effects_plot"
      ]
    }
  ],
  "_pkglogo": "https://github.com/loukiaspin/rnmamod/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/loukiaspin/rnmamod/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "askpass",
    "assertthat",
    "backports",
    "base64enc",
    "bit",
    "bit64",
    "boot",
    "broom",
    "bslib",
    "ca",
    "cachem",
    "callr",
    "car",
    "carData",
    "cli",
    "clipr",
    "cluster",
    "coda",
    "codetools",
    "colorspace",
    "commonmark",
    "CompQuadForm",
    "corrplot",
    "cowplot",
    "cpp11",
    "crayon",
    "crosstalk",
    "curl",
    "data.table",
    "dendextend",
    "Deriv",
    "digest",
    "doBy",
    "dplyr",
    "egg",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "forcats",
    "foreach",
    "forecast",
    "Formula",
    "fracdiff",
    "fs",
    "gclus",
    "gemtc",
    "generics",
    "ggfittext",
    "ggplot2",
    "ggpubr",
    "ggrepel",
    "ggsci",
    "ggsignif",
    "glue",
    "gridExtra",
    "gridtext",
    "gtable",
    "heatmaply",
    "highr",
    "hms",
    "htmltools",
    "htmlwidgets",
    "httr",
    "igraph",
    "isoband",
    "iterators",
    "jpeg",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "litedown",
    "lme4",
    "lmtest",
    "magrittr",
    "markdown",
    "MASS",
    "mathjaxr",
    "Matrix",
    "MatrixModels",
    "memoise",
    "meta",
    "metabook",
    "metadat",
    "metafor",
    "mgcv",
    "microbenchmark",
    "mime",
    "minqa",
    "modelr",
    "nlme",
    "nloptr",
    "nnet",
    "numDeriv",
    "openssl",
    "otel",
    "pbapply",
    "pbkrtest",
    "permute",
    "pillar",
    "pkgconfig",
    "plotly",
    "plyr",
    "png",
    "polynom",
    "prettyunits",
    "processx",
    "progress",
    "promises",
    "ps",
    "purrr",
    "qap",
    "quantreg",
    "R2jags",
    "R2WinBUGS",
    "R6",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "readr",
    "reformulas",
    "registry",
    "reshape2",
    "Rglpk",
    "rjags",
    "rlang",
    "rmarkdown",
    "rstatix",
    "S7",
    "sass",
    "scales",
    "seriation",
    "shades",
    "slam",
    "SparseM",
    "stringi",
    "stringr",
    "survival",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "timeDate",
    "tinytex",
    "truncnorm",
    "TSP",
    "tzdb",
    "urca",
    "utf8",
    "vctrs",
    "vegan",
    "viridis",
    "viridisLite",
    "vroom",
    "webshot",
    "withr",
    "writexl",
    "xfun",
    "xml2",
    "yaml",
    "zoo"
  ],
  "_sysdeps": [
    {
      "shlib": "libjags",
      "package": "jags",
      "headers": "jags",
      "source": "jags",
      "version": "4.3.2-2.2404.0",
      "name": "jags",
      "homepage": "https://mcmc-jags.sourceforge.io",
      "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler.  It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary."
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "network_description.Rmd",
      "filename": "network_description.html",
      "title": "Description of the network",
      "author": "Loukia M. Spineli",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Example on a binary outcome",
        "Dataset preparation",
        "The network plot",
        "Network characteristics",
        "Distribution of the outcome",
        "Distribution of missing participants across the network",
        "Distribution of missing participants across the trials",
        "References"
      ],
      "created": "2021-10-04 12:01:18",
      "modified": "2023-07-07 11:55:59",
      "commits": 17
    },
    {
      "source": "perform_network_metaanalysis.Rmd",
      "filename": "perform_network_metaanalysis.html",
      "title": "Perform network meta-analysis",
      "author": "Loukia M. Spineli",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Example on a binary outcome",
        "Perform Bayesian random-effects network meta-analysis",
        "Run the model",
        "Using all arguments",
        "The output",
        "No or partially extracted missing participant outcome data",
        "References"
      ],
      "created": "2021-10-22 08:13:33",
      "modified": "2023-07-07 11:55:59",
      "commits": 11
    }
  ],
  "_score": 5.982271233039569,
  "_indexed": true,
  "_nocasepkg": "rnmamod",
  "_universes": [
    "loukiaspin"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.5.0",
      "date": "2026-06-01T07:23:28.000Z",
      "distro": "noble",
      "commit": "9c70b332c812f635080ca2444bb77cfa939fde07",
      "fileid": "b35840b123c27df8d0d3ba0dc97c35e40fd1f1bb7a687e18cfd88bf598fc4adf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukiaspin/actions/runs/26740721596"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.5.0",
      "date": "2026-06-01T07:23:19.000Z",
      "distro": "noble",
      "commit": "9c70b332c812f635080ca2444bb77cfa939fde07",
      "fileid": "2710ffbb211e07e55bb6943ea39cad30ec292533753dfcd38e8da6daa04c33b6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukiaspin/actions/runs/26740721596"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.5.0",
      "date": "2026-06-01T07:32:29.000Z",
      "commit": "9c70b332c812f635080ca2444bb77cfa939fde07",
      "fileid": "509f528d5a68141dfb2be81df8b440bdc05a9a03e5dce26d3f3945c4ab2bb888",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukiaspin/actions/runs/26740721596"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.5.0",
      "date": "2026-06-01T07:34:21.000Z",
      "commit": "9c70b332c812f635080ca2444bb77cfa939fde07",
      "fileid": "0912dc11bf8da448df378c4e128ecd894218d8980ab89b69ba70c3a1a68f2453",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukiaspin/actions/runs/26740721596"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.5.0",
      "date": "2026-06-01T07:23:34.000Z",
      "commit": "9c70b332c812f635080ca2444bb77cfa939fde07",
      "fileid": "292e33bfec73124a1dcc1a798eea36cbec9f95f2b58877e75c6e6f6a29626655",
      "status": "success",
      "buildurl": "https://github.com/r-universe/loukiaspin/actions/runs/26740721596"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.5.0",
      "date": "2026-06-01T07:22:06.000Z",
      "commit": "9c70b332c812f635080ca2444bb77cfa939fde07",
      "fileid": "7665552e15e9a3e45f76d784610a5d075ee2d6158e4b30685c712ef52064932c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukiaspin/actions/runs/26740721596"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.5.0",
      "date": "2026-06-01T07:22:19.000Z",
      "commit": "9c70b332c812f635080ca2444bb77cfa939fde07",
      "fileid": "f30aa469417155a14405b5ed8d1ec0a7b56d98eabcf1055708e706b28aa6f8c4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukiaspin/actions/runs/26740721596"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.5.0",
      "date": "2026-06-01T07:22:05.000Z",
      "commit": "9c70b332c812f635080ca2444bb77cfa939fde07",
      "fileid": "32268e625fd0e8a4f2836436e25724827271855b234c82d8fc64504fb43ac96e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukiaspin/actions/runs/26740721596"
    }
  ]
}